Change Log 2020/06~

2020/09/29

  1. updated homepage

  2. git branch :

  • local : master

  • remote : origin/master

2020/08/18

  1. folder in *.conf is changed to relative path

  2. in src/Function/StatisticalEquilibrium/LibArray.py, added function

  • convert_ni_to_nj_by_ni

  1. modified rate in notebooks/StatisticalEquilibrium/SE_Plots.ipynb

  2. completed notebooks/StatisticalEquilibrium/SE_Plots.ipynb

  • net rate

  • markdown equations

2020/08/10

  1. added visualization module src/Visual/DragLine2D for interactive 1D radiative transfer

2020/08/08

  1. modified src.Atomic.PhotoIonize.bound_free_radiative_transition_coefficient to have correct Rki_spon (in wavelength unit)

  2. in src/Visual/Grotrian, we renamed

  • Grotrian.show_transition_rate() -> Grotrian.plot_transition_rate()

  • Grotrian.show_Grotrian() -> Grotrian.plot_transitions()

  1. modified gj/gi to float(gi)/float(gi) since they give different accuracy because gi and gj are integers

  2. moved notebooks/StatisticalEquilibrium/Lib.py to src/Function/StatisticalEquilibrium/LibArray.py

  3. moved notebooks/StatisticalEquilibrium/Lib.2py to src/Function/StatisticalEquilibrium/LibClass.py

  4. in src/Structure/AtomCls, we added function InitAtom(), which takes /path/to/*.conf file as an input and returns a Atom object

2020/08/07

  1. now the configuration string in data files are without prefix

  2. in src/Visual/Grotrian, we added

  • Grotrian.show_transition_rate()

  • Grotrian.show_Grotrian()

  1. Grotrian now has configuration data file like *.Grotrian

  2. in src/Structure/AtmosphereCls, we added

  • AtmosphereCartesian.read_BackRad_QS()

  • AtmosphereCartesian.BackRad_int

  • AtmosphereCartesian.BackRad_wav

  • AtmosphereCartesian.BackRadAir_int

  • AtmosphereCartesian.BackRadAir_wav

  1. added TODO.rst

2020/07/30

  1. 1-year schedule in notebooks/StatisticalEquilibrium/Plots_v2.ipynb

  2. in data/atom/Ca_II/Ca_II.Level, energies have been adjusted back to NIST values

  • previous problem is caused by wavelength in vacuum/air

  1. in src.Atomic.BasicP, added functions

  • refractive_index_in_air

  • air_to_vacuum

  1. now “3000-10000A” and “10000-13400A” is corresponded to wavelength in vacuum.

  2. added notebooks/StatisticalEquilibrium/Lib2.py for the sake of high level function calling

  • the usage of notebooks/StatisticalEquilibrium/Lib2.py is illustrated in notebooks/StatisticalEquilibrium/Plots_v2.ipynb

2020/07/20

  1. src.Uilt.Class.help() now can response to both class and recarray

  2. in data/atom/Ca_II/Ca_II.Level, energies have been adjusted to fit each central wavelength

  3. quiet sun intensity atlas is now available : data/intensity/atlas/QS/atlas_QS.npy

    • notebooks/Atlas/Atlas_QS.ipynb gives a naive illustration to this atlas

2020/07/15

  1. in src.Uilt.Class, we added functions

  • help : print all attributes and methods in the class object

  • help_method : print all methods in the class object

  • help_attribute : print all attributes in the class object

  1. in src.Structure.AtomCls, in class Atom(), attribute .am has been renamed to .Mass

  2. reconstructed src.Structure.AtomCls.Atom(), now we have

  • Atom().Level, Atom().Line, Atom.Cont to store information of energy level, line transition and continuum transitions, respectively.

  • src.Structure.AtomCls.Collisional_Transition() to store information of Collisional Excitation/Ionization

  • src.Structure.AtomCls.Photoionization() to store information of Photoionization

  • src.Structure.MeshCls.WavelengthMesh() to take charge of wavelength construction for Line/Continuum

  • src.Structure.RadLineCls.RadiativeLine() to take charge of radiative lines

2020/06/26

  1. in src.Structure.AtmosphereCls, we added AtmosphereC0d

  2. dependency of numba has been changed from 0.43.0 to 0.49.1, and this will not affect code execution.

  3. in src.Structure.AtomCls, Atom.PI_table has been changed to Atom.PI_table_list. all the list attributes in Atom() are created by

... = = []

however, in the future, this will be changed to

from numba.typed import List
... = List()

  1. module src.Atomic.PhotoIonize has been created for functions related to photoionization/recombination.

  2. in src.Atomic.PhotoIonize, we added

  • interpolate_PI_intensity

  • interpolate_PI_alpha

  • bound_free_radiative_transition_coefficient

  1. in src.Atomic.BasicP, we added

  • get_Level_gamma

  • get_Line_Gamma

  • get_damping_a

  1. in src.RadiativeTransfer.Profile, we added

  • half_to_full

  1. src.Atomic.ColExcite has been reconstructed to src.Atomic.Collision, including functions for both collisional (de)excitation and collisional ionization/recombination. Functions includes

  • interpolate_CE_fac, input argument changed

  • interpolate_CI_fac

  • Cij_to_Cji

  • get_CE_rate_coe

  • get_CI_rate_coe

  1. notebooks/Demo_FullStatisticalEquilirbium_v1.ipynb created. Demo of full statistical equilibrium at single depth using Ca_II is completed(?).

  2. Attention.rst has been added to the main page of documentation website. Currently, it includes

  • Convention of wavelength-frequency conversion : related to wavelength/frequency mesh. intensity unit and input argument of Voigt function.

2020/06/23

  1. added documentation ./index.html